Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs11643288 chr16:90052593 C/T 1.11E-8 172 25.77 20.28 6.62 KM Plot
PCPG rs11643448 chr16:89956247 C/T 0.000157 176 25.77 21.5 36.37 KM Plot
PCPG rs11643722 chr16:90026775 A/G 1.26E-8 171 25.77 20.2 6.62 KM Plot
PCPG rs11644526 chr16:89898660 C/T 0.000176 174 25.87 22.63 36.37 KM Plot
PCPG rs11644804 chr16:89976224 G/A 0.00021 170 25.87 20.37 36.37 KM Plot
PCPG rs11645183 chr16:90031419 G/A 1.23E-8 171 25.67 20.28 6.62 KM Plot
PCPG rs11645212 chr16:90049434 T/C 1.11E-8 172 25.87 20.2 6.62 KM Plot
PCPG rs11645240 chr16:89837326 T/C 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs11645321 chr16:89837491 T/C 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs11645376 chr16:89912281 G/C 0.000182 173 25.87 23.37 36.37 KM Plot
PCPG rs116457537 chr7:105152072 A/G 5.56E-5 177 20.17 29.43 2.28 KM Plot
PCPG rs11645916 chr16:89835234 G/A 0.000167 177 25.87 20.17 36.37 KM Plot
PCPG rs11645970 chr16:89958118 G/A 0.000157 176 25.77 21.5 36.37 KM Plot
PCPG rs11646270 chr16:89965988 T/G 0.000157 175 25.87 21.5 36.37 KM Plot
PCPG rs11646374 chr16:89857935 G/A 0.000159 177 25.87 20.37 36.37 KM Plot